EDAMAligner
- class EDAMAligner[source]
Bases:
Aligner
Aligner for the EDAM ontology.
Instantiate the aligner.
Attributes Summary
Header to put on the curation table, corresponding to
get_curation_row()
Keyword arguments to pass to the getter function on call
The key for the external registry
Methods Summary
get_curation_row
(external_id, external_entry)Prepare curation rows for unaligned EDAM ontology classes.
get_skip
()Get entries that should be skipped and their reasons.
getter
()Get the EDAM registry.
Attributes Documentation
- curation_header: ClassVar[Sequence[str]] = ('name', 'description')
Header to put on the curation table, corresponding to
get_curation_row()
- getter_kwargs: ClassVar[Optional[Mapping[str, Any]]] = {'force_download': False}
Keyword arguments to pass to the getter function on call
Methods Documentation
- get_curation_row(external_id, external_entry)[source]
Prepare curation rows for unaligned EDAM ontology classes.
- getter()
Get the EDAM registry.